LabLog-SFL

LogID Title  Initial  Date
AF001 Codebook for GA341 (= YJC AE538 = YMU RNA-seq on OKB2/S1F/THP1) SFL 10/21/15
AF002 Experimental sheme for AE592 (YMU RNA-seq GA416 and GA417) SFL 10/23/15
AF003 Codebook for GA417 SFL 11/3/15
AF004 Codebook for GA416 SFL 11/4/15
AF005 Codebook for Po-Ting SFL 11/5/15
AF006 Codebook for tidy 40T/N raw data (2015_1110_11SVA_40TN_raw = 40TNRaw) SFL 11/10/15
AF007 SFL



#1
由 sufang 在 二, 11/10/2015 – 10:59 發表。

AE901 Annotations for GA416 and GA417

(GA417) Long non-coding RNAs (lncRNA) in EBV/KSHV reactivation
GA417 Cell ID Dox-inducible genes (24h) viral genomes (accession no)
SFL1 293TetLuc_D24 luciferase
SFL2 293TetER_D24 EBV Rta
SFL4 EREV8_D24 EBV Rta EBV (akata, KC207813.1)
SFL5 ERKV_D24 EBV Rta KSHV (JSC-1, GQ994935.1)
 – HEK293 (ATCC® CRL-1573)  human embryonic kidney epithelial cell
– Adenovirus 5 nts 1 to 4344 is integrated into chromosome 19 (19q13.2)

Processing of GA417 in Molas
Molas Implication synonym
SFL2/SFL1 Genes modulated by EBV Rta Rta_D24
SFL4/SFL1 Genes modulated by EBV Rta during  EBV reactivation EREV8_D24
SFL5/SFL1 Genes modulated by EBV Rta during KSHV reactivation ERKV_D24


(GA416) Long non-coding RNAs (lncRNA) in EBV infected B cells
GA416 Cell ID implication viral genomes (access no)
1 Akata EBV – ve Akata B cell (no EBV)
2 Akata EBV – ve_IgG Activation of Akata cells with anti-IgG
3 Akata EBV +ve EBV infected-Akata B cell EBV (Akata, KC207813.1)
4 Akata EBV +ve_IgG Activation of Akata-EBV cells with anti-IgG EBV (Akata, KC207813.1)
5 T4_B0 uninfected B cells (B0) from tonsil
6 T4_LCL EBV transformed tonsil B cells EBV (B95-8, V01555.2)
7 B0 uninfected cells (B0)
8 LCL_B114 EBV transformed B cells EBV (B95-8, V01555.2)



Processing of GA416 in Molas
GA416 synonym implication viral genomes (access no)
2/1 Akata_IgG Akata_IgG activation
4/2 Akata_IgG_EBV Akata_IgG_EBV activation EBV (Akata, KC207813.1)
3/1 Akata_EBV_latent EBV transformed Akata cells EBV (Akata, KC207813.1)
4/3 Akata_EBV_lytic Akata_EBV lytic EBV (Akata, KC207813.1)
6/5 LCL_T4 EBV transformed tonsil B cells EBV (B95-8, V01555.2)
8/7 LCL_B114 EBV transformed B cells EBV (B95-8, V01555.2)



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